Keich, Uri: search on Z-Library

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1

Reliability and efficiency of algorithms for computing the significance of the Mann–Whitney test

Niranjan Nagarajan, Uri Keich

Journal:

Computational Statistics

Year:

2009

Language:

english

File:

PDF, 587 KB

english, 2009

2

Krein's strings, the symmetric moment problem, and extending a real positive definite function

Journal:

Communications on Pure and Applied Mathematics

Year:

1999

Language:

english

File:

PDF, 251 KB

english, 1999

3

Alignment Constrained Sampling

Ng, Patrick, Keich, Uri

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 560 KB

english, 2011

4

A generalization of the Ahlswede-Daykin inequality

Ron Aharoni, Uri Keich

Journal:

Discrete Mathematics

Year:

1996

Language:

english

File:

PDF, 497 KB

english, 1996

5

Designing seeds for similarity search in genomic DNA

Jeremy Buhler, Uri Keich, Yanni Sun

Journal:

Journal of Computer and System Sciences

Year:

2005

Language:

english

File:

PDF, 326 KB

english, 2005

6

On spaced seeds for similarity search

Uri Keich, Ming Li, Bin Ma, John Tromp

Journal:

Discrete Applied Mathematics

Year:

2004

Language:

english

File:

PDF, 235 KB

english, 2004

7

Target-Decoy Approach and False Discovery Rate: When Things May Go Wrong

Nitin Gupta, Nuno Bandeira, Uri Keich, Pavel A. Pevzner

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2011

Language:

english

File:

PDF, 329 KB

english, 2011

8

Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast

Uri Keich, Hong Gao, Jeffrey S Garretson, Anand Bhaskar, Ivan Liachko, Justin Donato, Bik K Tye

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 301 KB

english, 2008

9

Deep RNA sequencing ofL. monocytogenesreveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

Haley F Oliver, Renato H Orsi, Lalit Ponnala, Uri Keich, Wei Wang, Qi Sun, Samuel W Cartinhour, Melanie J Filiatrault, Martin Wiedmann, Kathryn J Boor

Journal:

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

10

Novel features of ARS selection in budding yeastLachancea kluyveri

Ivan Liachko, Emi Tanaka, Katherine Cox, Shau Chee Claire Chung, Lu Yang, Arael Seher, Lindsay Hallas, Eugene Cha, Gina Kang, Heather Pace, Jasmine Barrow, Maki Inada, Bik-Kwoon Tye, Uri Keich

Journal:

Year:

2011

Language:

english

File:

PDF, 1.43 MB

english, 2011

11

Optimal decompositions for theK-functional for a couple of Banach lattices

Michael Cwikel, Uri Keich

Journal:

Arkiv för Matematik

Year:

2001

Language:

english

File:

PDF, 1.72 MB

english, 2001

12

A Fast and Numerically Robust Method for Exact Multinomial Goodness-of-Fit Test

Uri Keich and Niranjan Nagarajan

Journal:

Journal of Computational and Graphical Statistics

Year:

2006

Language:

english

File:

PDF, 1.60 MB

english, 2006

13

sFFT: A Faster Accurate Computation of the p-Value of the Entropy Score

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 515 KB

english, 2005

14

On the Importance of Well-Calibrated Scores for Identifying Shotgun Proteomics Spectra

Keich, Uri, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 4.14 MB

english, 2015

15

Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly

Zhi, Degui, Keich, Uri, Pevzner, Pavel, Heber, Steffen, Tang, Haixu

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.54 MB

english, 2007

16

A Fast and Numerically Robust Method for Exact Multinomial Goodness-of-Fit Test

Keich, Uri, Nagarajan, Niranjan

Journal:

Journal of Computational and Graphical Statistics

Year:

2006

Language:

english

File:

PDF, 892 KB

english, 2006

17

Confidently Estimating the Number of DNA Replication Origins

Bhaskar, Anand, Keich, Uri

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 541 KB

english, 2010

18

A Comprehensive Genome-Wide Map of Autonomously Replicating Sequences in a Naive Genome

Liachko, Ivan, Bhaskar, Anand, Lee, Chanmi, Chung, Shau Chee Claire, Tye, Bik-Kwoon, Keich, Uri, Newlon, Carol S.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.81 MB

english, 2010

19

Tandem Mass Spectrum Identification via Cascaded Search

Kertesz-Farkas, Attila, Keich, Uri, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 773 KB

english, 2015

20

Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics

Keich, Uri, Kertesz-Farkas, Attila, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

21

[ACM Press the sixth annual international conference - Washington, DC, USA (2002.04.18-2002.04.21)] Proceedings of the sixth annual international conference on Computational biology - RECOMB '02 - Finding motifs in the twilight zone

Keich, Uri, Pevzner, Pavel A.

Year:

2002

Language:

english

File:

PDF, 1.68 MB

english, 2002

22

Accurate pairwise convolutions of non-negative vectors via FFT

Wilson, Huon, Keich, Uri

Journal:

Computational Statistics & Data Analysis

Year:

2016

Language:

english

File:

PDF, 766 KB

english, 2016

23

A Symmetric Length-Aware Enrichment Test

Manescu, David, Keich, Uri

Journal:

Journal of Computational Biology

Year:

2016

Language:

english

File:

PDF, 552 KB

english, 2016

24

Correction to “On the Importance of Well-Calibrated Scores for Identifying Shotgun Proteomics Spectra”

Keich, Uri, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 3.03 MB

english, 2016

25

Correction to “Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics”

Keich, Uri, Kertesz-Farkas, Attila, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 489 KB

english, 2016

26

Accurate Small Tail Probabilities of Sums of iid Lattice-Valued Random Variables via FFT

Wilson, Huon, Keich, Uri

Journal:

Journal of Computational and Graphical Statistics

Year:

2017

Language:

english

File:

PDF, 88 KB

english, 2017

27

Response to “Mass spectrometrists should search for all peptides, but assess only the ones they care about”

Noble, William Stafford, Keich, Uri

Journal:

Year:

2017

Language:

english

File:

PDF, 132 KB

english, 2017

28

Controlling the FDR in imperfect matches to an incomplete database

Keich, Uri, Noble, William Stafford

Journal:

Journal of the American Statistical Association

Year:

2017

Language:

english

File:

PDF, 695 KB

english, 2017

29

An averaging strategy to reduce variability in target-decoy estimates of false discovery rate

Keich, Uri, Tamura, Kaipo, Noble, William Stafford

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 1.12 MB

english, 2018